[解決済み】クラスパスリソースで定義された名前 'entityManagerFactory' を持つビーンの作成エラー : initメソッドの呼び出しに失敗

質問

Springのプロジェクトをコンパイルすると、以下のエラーが発生します。

クラスで定義された名前 'entityManagerFactory'を持つBeanの作成エラー パスリソース [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: init メソッドの呼び出しに失敗しました。

STS EclipseとMySqlデータベースを使用しています。

私の接続文字列は Application.Properties は

spring.datasource.url=jdbc:mysql://localhost:3306/stgdb
spring.datasource.username=root
spring.datasource.password=root
spring.datasource.driver-class-name=com.mysql.jdbc.Driver
spring.jpa.hibernate.ddl-auto=update

エラーの詳細は以下の通りです。

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2016-10-15 15:34:38.875[0;39m [31mERROR[0;39m [35m3700[0;39m [2m---[0;39m [2m[           main][0;39m [36mo.s.boot.SpringApplication              [0;39m [2m:[0;39m Application startup failed

org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076) ~[spring-context-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851) ~[spring-context-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541) ~[spring-context-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122) ~[spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
    at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:761) [spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
    at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:371) [spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:315) [spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:1186) [spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:1175) [spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
    at com.s2g.testrestapplication.TestRestApplication.main(TestRestApplication.java:10) [classes/:na]
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
    at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.persistenceException(EntityManagerFactoryBuilderImpl.java:954) ~[hibernate-entitymanager-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:882) ~[hibernate-entitymanager-5.0.11.Final.jar:5.0.11.Final]
    at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60) ~[spring-orm-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:353) ~[spring-orm-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:373) ~[spring-orm-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:362) ~[spring-orm-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1642) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1579) ~[spring-beans-4.3.3.RELEASE.jar:4.3.3.RELEASE]
    ... 16 common frames omitted
Caused by: org.hibernate.exception.GenericJDBCException: Unable to obtain JDBC Connection
    at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:47) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:109) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:95) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.extract.internal.ExtractionContextImpl.getJdbcConnection(ExtractionContextImpl.java:65) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.extract.internal.ExtractionContextImpl.getJdbcDatabaseMetaData(ExtractionContextImpl.java:75) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl.locateTableInNamespace(InformationExtractorJdbcDatabaseMetaDataImpl.java:339) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.extract.internal.InformationExtractorJdbcDatabaseMetaDataImpl.getTable(InformationExtractorJdbcDatabaseMetaDataImpl.java:241) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl.getTableInformation(DatabaseInformationImpl.java:105) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.internal.SchemaMigratorImpl.doMigrationToTargets(SchemaMigratorImpl.java:162) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.internal.SchemaMigratorImpl.doMigration(SchemaMigratorImpl.java:60) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.hbm2ddl.SchemaUpdate.execute(SchemaUpdate.java:134) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.hbm2ddl.SchemaUpdate.execute(SchemaUpdate.java:101) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:472) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:444) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:879) ~[hibernate-entitymanager-5.0.11.Final.jar:5.0.11.Final]
    ... 22 common frames omitted
Caused by: com.atomikos.jdbc.AtomikosSQLException: Connection pool exhausted - try increasing 'maxPoolSize' and/or 'borrowConnectionTimeout' on the DataSourceBean.
    at com.atomikos.jdbc.AtomikosSQLException.throwAtomikosSQLException(AtomikosSQLException.java:46) ~[transactions-jdbc-3.9.3.jar:na]
    at com.atomikos.jdbc.AbstractDataSourceBean.throwAtomikosSQLException(AbstractDataSourceBean.java:90) ~[transactions-jdbc-3.9.3.jar:na]
    at com.atomikos.jdbc.AbstractDataSourceBean.throwAtomikosSQLException(AbstractDataSourceBean.java:85) ~[transactions-jdbc-3.9.3.jar:na]
    at com.atomikos.jdbc.AbstractDataSourceBean.getConnection(AbstractDataSourceBean.java:347) ~[transactions-jdbc-3.9.3.jar:na]
    at com.atomikos.jdbc.AbstractDataSourceBean.getConnection(AbstractDataSourceBean.java:394) ~[transactions-jdbc-3.9.3.jar:na]
    at org.hibernate.engine.jdbc.connections.internal.DatasourceConnectionProviderImpl.getConnection(DatasourceConnectionProviderImpl.java:122) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator$ConnectionProviderJdbcConnectionAccess.obtainConnection(JdbcEnvironmentInitiator.java:180) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    at org.hibernate.tool.schema.extract.internal.ExtractionContextImpl.getJdbcConnection(ExtractionContextImpl.java:62) ~[hibernate-core-5.0.11.Final.jar:5.0.11.Final]
    ... 33 common frames omitted
==============================
Pom.xml file

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>com.s2g.testrestapplication</groupId>
    <artifactId>testrestapplication</artifactId>
    <version>0.0.1-SNAPSHOT</version>
    <packaging>jar</packaging>

    <name>TestRestApplication</name>
    <description>Demo project for Spring Boot</description>

    <parent>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-starter-parent</artifactId>
        <version>1.4.1.RELEASE</version>
        <relativePath /> <!-- lookup parent from repository -->
    </parent>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <java.version>1.8</java.version>
    </properties>

    <dependencies>
        <dependency>
            <groupId>io.springfox</groupId>
            <artifactId>springfox-swagger2</artifactId>
            <version>2.2.2</version>
        </dependency>

        <dependency>
            <groupId>io.springfox</groupId>
            <artifactId>springfox-swagger-ui</artifactId>
            <version>2.2.2</version>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-security</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-web</artifactId>
        </dependency>

        <dependency>
            <groupId>mysql</groupId>
            <artifactId>mysql-connector-java</artifactId>
            <scope>runtime</scope>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-test</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-data-jpa</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opensaml</groupId>
            <artifactId>opensaml-saml-api</artifactId>
            <version>3.1.1</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
            <version>3.0</version>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-jersey</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-jta-atomikos</artifactId>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <plugin>
                <groupId>org.springframework.boot</groupId>
                <artifactId>spring-boot-maven-plugin</artifactId>
            </plugin>
        </plugins>
    </build>


</project>

解決方法は？

まず、以下の依存関係を追加することから始めます。

<dependency>
    <groupId>org.hibernate</groupId>
    <artifactId>hibernate-core</artifactId>
    <version>4.1.4.Final</version>
</dependency>

そして

<dependency>
    <groupId>org.hibernate</groupId>
    <artifactId>hibernate-entitymanager</artifactId>
    <version>5.2.3.Final</version>
</dependency>

UPDATEです。 または、単純に以下の依存関係を追加します。

<dependency>
    <groupId>javax.xml.bind</groupId>
    <artifactId>jaxb-api</artifactId>
    <version>2.3.0</version>
</dependency>